.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/enrichment_multi_bed_example.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        Click :ref:`here <sphx_glr_download_auto_examples_enrichment_multi_bed_example.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_enrichment_multi_bed_example.py:


Enrichment Plot Comparison Across BEDs
======================================

Plot overall fraction of methylated bases within multiple sets of regions of interest specified by bed files for a single sample.

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Create barplot comparing methylation levels in single sample across multiple regions of interest defined in bed files.

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1. Python option
----------------

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.. code-block:: default

    import dimelo as dm

    bam = "deep_ctcf_mod_mappings_merge.sorted.bam"
    beds = ["q10.150.slop.bed", "q10nopeak.bed"]
    sampleNames = ["chip_peak", "not_chip_peak"]
    outDir = "./out"
    dm.plot_enrichment(bam, sampleNames, beds, "A", outDir, threshA=190)


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2. Command line option
----------------------
``dimelo-plot-enrichment -f deep_ctcf_mod_mappings_merge.sorted.bam -s chip_peak not_chip_peak -b q10.150.slop.bed q10nopeak.bed -m A -o ./out -A 190``

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Output
----------------------
.. figure:: ../auto_examples/images/sample_deep_ctcf_mod_mappings_merge.sorted_A_enrichment_barplot.png


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** ( 0 minutes  0.000 seconds)


.. _sphx_glr_download_auto_examples_enrichment_multi_bed_example.py:


.. only :: html

 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-example



  .. container:: sphx-glr-download sphx-glr-download-python

     :download:`Download Python source code: enrichment_multi_bed_example.py <enrichment_multi_bed_example.py>`



  .. container:: sphx-glr-download sphx-glr-download-jupyter

     :download:`Download Jupyter notebook: enrichment_multi_bed_example.ipynb <enrichment_multi_bed_example.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_